All journal publications (1963-2013) | Bio-organic Synthesis

Universiteit Leiden

All journal publications (1963-2013)

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2003

van Well, R.M., Marinelli, L., Altona, C., Erkelens, K., Siegal, G., van Raaij, M., Llamas-Saiz, A.L., Kessler, H., Novellino, E., Lavecchia, A., van Boom, J.H., Overhand, M. , Conformational analysis of furanoid epsilon-sugar amino acid containing cyclic peptides by NMR spectroscopy, molecular dynamics simulation, and X-ray crystallography: Evidence for a novel turn structure, Journal of the American Chemical Society, vol. 125, no. 36, pp. 10822-10829.

1998

Ippel, H.H., van den Elst, H., van der Marel, G.A., van Boom, J.H., Altona, C. , Structural similarities and differences between H1- and H2-family DNA minihairpin loops: NMR studies of octameric minihairpins, Biopolymers, vol. 46, no. 6, pp. 375-393.

1996

Pikkemaat, J.A., Overmars, F.J.J., DreefTromp, C.M., vandenElst, H., vanBoom, J.H., Altona, C. , Conformational aspects of an uncharged phosphate analogon built in at the branch-point of a DNA four-way junction, Journal of Molecular Biology, vol. 262, no. 3, pp. 349-357.

Overmars, F.J.J., Pikkemaat, J.A., vandenElst, H., vanBoom, J.H., Altona, C. , NMR studies of DNA three-way junctions containing two unpaired thymidine bases: The influence of the sequence at the junction on the stability of the stacking conformers, Journal of Molecular Biology, vol. 255, no. 5, pp. 702-713.

1994

Pikkemaat, J.A., Vandenelst, H., Vanboom, J.H., Altona, C. , Nmr-Studies and Conformational-Analysis of a DNA 4-Way Junction Formed in a Linear Synthetic Oligonucleotide, Biochemistry, vol. 33, no. 49, pp. 14896-14907.

1993

Quaedflieg, P.J.L.M., Pikkemaat, J.A., Vandermarel, G.A., Kuylyeheskiely, E., Altona, C., Vanboom, J.H. , Synthesis and Physicochemical Properties of Decanucleotides Containing (3'-]5')-O-Ch2-O-Linkages at Predetermined Positions, Recueil Des Travaux Chimiques Des Pays-Bas-Journal of the Royal Netherlands Chemical Society, vol. 112, no. 1, pp. 15-21.

1992

Schmieder, P., Ippel, J.H., Vandenelst, H., Vandermarel, G.A., Vanboom, J.H., Altona, C., Kessler, H. , Heteronuclear Nmr of DNA with the Heteronucleus in Natural Abundance - Facilitated Assignment and Extraction of Coupling-Constants, Nucleic Acids Research, vol. 20, no. 18, pp. 4747-4751.

1990

Pieters, J.M.L., Devroom, E., Vandermarel, G.A., Vanboom, J.H., Koning, T.M.G., Kaptein, R., Altona, C. , Nucleic-Acid Constituents .62. Hairpin Structures in DNA Containing Arabinofuranosylcytosine - a Combination of Nuclear Magnetic-Resonance and Molecular-Dynamics, Biochemistry, vol. 29, no. 3, pp. 788-799.

1989

Pieters, J.M.L., Devroom, E., Vandermarel, G.A., Vanboom, J.H., Altona, C. , Conformational Consequences of the Incorporation of Arabinofuranosylcytidine in DNA - an Nmr-Study of the DNA Fragments D(Cgctagcg) and D(Cgactagcg) in Solution, European Journal of Biochemistry, vol. 184, no. 2, pp. 415-425.

Pieters, J.M.L., Mans, R.M.W., Vandenelst, H., Vandermarel, G.A., Vanboom, J.H., Altona, C. , Conformational and Thermodynamic Consequences of the Introduction of a Nick in Duplexed DNA Fragments - an Nmr-Study Augmented by Biochemical Experiments, Nucleic Acids Research, vol. 17, no. 12, pp. 4551-4565.

1988

Vandenhoogen, Y.T., Vanbeuzekom, A.A., Devroom, E., Vandermarel, G.A., Vanboom, J.H., Altona, C. , Bulge-out Structures in the Single-Stranded Trimer Aua and in the Duplex (Cuggugcgg).(Ccgcccag) - a Model-Building and Nmr-Study, Nucleic Acids Research, vol. 16, no. 11, pp. 5013-5030.

Vandenhoogen, Y.T., Lankhorst, P.P., Gijsman, P., Hartel, A.J., Vanboom, J.H., Altona, C. , Nucleic-Acid Constituents .54. Conformational-Analysis of the Dinucleotides 5'-Methylphospho-N6-Dimethyladenylyl-Uridine [Mpm2(6)a-U] and 5'-Methylphospho-Uridylyl-N6-Dimethyladenosine [Mpu-M2(6)a] and of the Trinucleotide U-M2(6)a-U - a Nuclear Magnetic-, European Journal of Biochemistry, vol. 171, no. 1-2, pp. 143-153.

Vandenhoogen, Y.T., Treurniet, S.J., Roelen, H.C.P.F., Devroom, E., Vandermarel, G.A., Vanboom, J.H., Altona, C. , Nucleic-Acid Constituents .55. Conformational-Analysis of the Tetranucleotides M2(6)a-M2(6)a-U-M2(6)a[M2(6)a=N6-Dimethyladenosine] and U-M2(6)a-U-M2(6)a and of the Hybrid Da-R(U-a) - a One-Dimensional and Two-Dimensional Nmr-Study, European Journal of Biochemistry, vol. 171, no. 1-2, pp. 155-162.

Vandenhoogen, Y.T., Treurniet, S.J., Roelen, H., Devroom, E., Vandermarel, G.A., Vanboom, J.H., Altona, C. , Nucleic-Acid Constituents .55. Conformational-Analysis of the Tetranucleotides M2(6)a-M2(6)a-U-M2(6)a[M2(6)a=N6-Dimethyladenosine] and U-M2(6)a-U-M2(6)a and of the Hybrid Da-R(U-a) - a One-Dimensional and Two-Dimensional Nmr-Study, European Journal of Biochemistry, vol. 171, no. 1-2, pp. 155-162.

Vandenhoogen, Y.T., Vanbeuzekom, A.A., Vandenelst, H., Vandermarel, G.A., Vanboom, J.H., Altona, C. , Extra Thymidine Stacks into the D(Ctggtgcgg).D(Ccgcccag) Duplex - an Nmr and Model-Building Study, Nucleic Acids Research, vol. 16, no. 7, pp. 2971-2986.

Vandenhoogen, Y.T., Erkelens, C., Devroom, E., Vandermarel, G.A., Vanboom, J.H., Altona, C. , Influence of Uracil on the Conformational Behavior of Rna Oligonucleotides in Solution, European Journal of Biochemistry, vol. 173, no. 2, pp. 295-303.

1987

Rinkel, L.J., Vandermarel, G.A., Vanboom, J.H., Altona, C. , Nucleic-Acid Constituents .47. Influence of N6-Methylation of Residue a(5) on the Conformational Behavior of D(C-C-G-a-a-T-T-C-G-G) in Solution Studied by H-1-Nmr Spectroscopy .1. The Duplex Form, European Journal of Biochemistry, vol. 163, no. 2, pp. 275-286.

Rinkel, L.J., Vandermarel, G.A., Vanboom, J.H., Altona, C. , Nucleic-Acid Constituents .48. Influence of N6-Methylation of Residue a(5) on the Conformational Behavior of D(C-C-G-a-a-T-T-C-G-G) in Solution Studied by H-1-Nmr Spectroscopy .2. The Hairpin Form, European Journal of Biochemistry, vol. 163, no. 2, pp. 287-296.

Orbons, L.P.M., Vandermarel, G.A., Vanboom, J.H., Altona, C. , An Nmr-Study of the Polymorphous Behavior of the Mismatched DNA Octamer D(M5c-G-M5c-G-T-G-M5c-G) in Solution - the B, Z, and Hairpin Forms, Journal of Biomolecular Structure & Dynamics, vol. 4, no. 6, pp. 939-963.

Rinkel, L.J., Vandermarel, G.A., Vanboom, J.H., Altona, C. , Influence of the Base Sequence on the Conformational Behavior of DNA Polynucleotides in Solution, European Journal of Biochemistry, vol. 166, no. 1, pp. 87-101.

Orbons, L.P.M., Vandermarel, G.A., Vanboom, J.H., Altona, C. , An Nmr-Study of Polymorphous Behavior of the Mismatched DNA Octamer D(M5c-G-M5c-G-a-G-M5c-G) in Solution - the B-Duplex and Hairpin Forms, European Journal of Biochemistry, vol. 170, no. 1-2, pp. 225-239.

1986

Orbons, L.P.M., Vandermarel, G.A., Vanboom, J.H., Altona, C. , Nucleic-Acid Constituents .45. The B-Form and Z-Form of the D(Mc-5-G)3 and D(Brc-5-G)3 Hexamers in Solution - a 300-Mhz and 500-Mhz Two-Dimensional Nmr-Study, European Journal of Biochemistry, vol. 160, no. 1, pp. 131-139.

Orbons, L.P.M., Vandermarel, G.A., Vanboom, J.H., Altona, C. , Hairpin and Duplex Formation of the DNA Octamer D(M5c-G-M5c-G-T-G-M5c-G) in Solution - an Nmr-Study, Nucleic Acids Research, vol. 14, no. 10, pp. 4187-4196.

Rinkel, L.J., Mellema, J.R., Vandermarel, G.A., Vanboom, J.H., Altona, C. , Nucleic-Acid Constituents .42. Influence of 2-Aminoadenosine, a', on the Conformational Behavior of D(T-a'-T-a') - a One-Dimensional Proton Nmr-Study at 300-Mhz and 500-Mhz, European Journal of Biochemistry, vol. 154, no. 2, pp. 259-265.

Rinkel, L.J., Sanderson, M.R., Vandermarel, G.A., Vanboom, J.H., Altona, C. , Nucleic-Acid Constituents .43. Conformational-Analysis of the Octamer D(G-G-C-C-G-G-C-C) in Aqueous-Solution - a One-Dimensional and Two-Dimensional Proton Nmr-Study at 300 Mhz and 500 Mhz, European Journal of Biochemistry, vol. 159, no. 1, pp. 85-93.

Bio-organic Synthesis